Honestly, I prefer the PC version ending/intro. It just fits more with the way the rest of the game looks.
I guess it depends on which version you grew up with or was introduced to.
Myself it was the 3DO version and at that time I had a computer which would refuse to play SC2 because the computer was kept up to date. Tried to get it working but no dice no matter which route I took. And the only reason I tried to get it working was because my CD got scratched.
That was my only issue with the 3DO, just a tiny little scratch would throw that thing into disarray.